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Thermo Fisher
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b6 129p2 nos2 tm1lau j 0.4 AND NO-specific effect >0.5); NO-dependent downregulation (blue; WT stimulation effect < −0.4 AND NO-specific effect < −0.5); NO-independent response (yellow; |WT stimulation effect| > 0.4 AND |iNOS KO stimulation effect| > 0.4 AND |NO-specific effect| < 0.5); under thresholds (grey; not meeting criteria above). " width="250" height="auto" />B6 129p2 Nos2 Tm1lau J, supplied by Jackson Laboratory, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more https://www.bioz.com/result/b6 129p2 nos2 tm1lau j/product/Jackson Laboratory Average 86 stars, based on 1 article reviews
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Journal: Molecular Therapy. Nucleic Acids
Article Title: Nitric oxide-dependent stabilization of vimentin confers chemoresistance in ovarian cancer
doi: 10.1016/j.omtn.2026.102924
Figure Lengend Snippet: Constitutive iNOS expression in ovarian cancer cells (A) mRNA expression levels of iNOS across an ovarian cancer cell lines from the CCLE database. (B) Assessment of the relative NOS2 mRNA expression in ovarian cancer cell lines from the NCI-60 database. (C) Protein expression levels of iNOS in ovarian cancer cells were determined by western blot. (D) RT qPCR analyses of NOS2 mRNA in ovarian cancer cell lines. (E) Constitutive protein expression of iNOS is maintained regardless of stimulation with LPS or a cytokine mix in OVCAR8 and A2780 cells. (F) Inducible expression of iNOS upon cytokine stimulation in A2780 wild-type cells lacks basal expression. Experiments were performed in biological duplicate or triplicate.
Article Snippet: The following primers for TaqMan Gene Expression Assay were purchased from
Techniques: Expressing, Western Blot, Quantitative RT-PCR
Journal: Molecular Therapy. Nucleic Acids
Article Title: Nitric oxide-dependent stabilization of vimentin confers chemoresistance in ovarian cancer
doi: 10.1016/j.omtn.2026.102924
Figure Lengend Snippet: iNOS increases sensitivity to cisplatin in ovarian cancer (A) The cell viability of OVCAR8 cells was assessed using RealTime-Glo MT Cell Viability Assay after culturing in increasing concentrations of cisplatin for 72 h. (B) OVCAR8 cells incubated with or without L-NMMA for 48 h, measured by RealTime-Glo MT Cell Viability Assay. (C) Cell viability after either no treatment (control), cisplatin, and a combination of cisplatin and L-NMMA by RealTime-Glo MT Cell Viability Assay. (D) Western blot analysis of vimentin protein expression in ovarian cancer cell lines. (E) Ovarian cancer cell lines were analyzed for VIM mRNA levels by qPCR. (F) OVCAR8 cells were treated with or without L-NMMA (4, 6, 8, and 10 mM) for 48 h, and western blot was used to analyze the effect of L-NMMA on the vimentin protein expression. B-actin was used as a loading control. Band densities were quantified using ImageJ analysis. Error bars, SEM. ∗ p < 0.05; ∗∗ p < 0.01 (compared with the control group, using two-way ANOVA). All experiments were independently repeated three times.
Article Snippet: The following primers for TaqMan Gene Expression Assay were purchased from
Techniques: Viability Assay, Incubation, Control, Western Blot, Expressing
Journal: Molecular Therapy. Nucleic Acids
Article Title: Nitric oxide-dependent stabilization of vimentin confers chemoresistance in ovarian cancer
doi: 10.1016/j.omtn.2026.102924
Figure Lengend Snippet: iNOS knockout increased chemosensitivity and impaired cell motility and migration of ovarian cancer cells (A) Immunoblotting showing reduced iNOS (left) and vimentin (right) expression levels following NOS2 knockdown in the OVCAR8 cells. (B) NOS2 knockdown sensitized OVCAR8 cells to cisplatin, reducing its IC 50 value. Log-logistic model was used to analyze the data. The group comparison between control group and KO-1 had a p value = 8.98e-07. The comparison between control and KO-2 had a p value = 0.0132. The detected EC50 for control group was 0.8554, for KO-1 was 0.6037, for KO2 was 0.7688. (C and D) Analysis of reduced protein (left) and mRNA (right) expression of iNOS and vimentin following siRNA transfection in OVCAR8 and A2780cis cells for 72 h, assessed by western blot and RT-qPCR. (E) OVCAR8 cells were transfected with 2 different siRNAs or the scramble siRNA and were assessed for migration using the scratch wound assay. The area of the wound was measured at 0, 12, 24, and 36 h by the IncuCyte live-cell analysis system. Two-way repeated measures ANOVA was used to analyze the data. After 6 h, siRNA1 had p value = 1, siRNA2 had p value = 0.23. After 12 h, siRNA1 had p value = 0.71 and siRNA 2 had p value = 0.16. After 24 h, siRNA1 had a p value = 0.39 and siRNA2 had a p value = 0.05. After 36 h, siRNA1 had a p value = 0.86 and siRNA2 had a p value = 0.04. (F) NOS2 KO-1 and KO-2 OVCAR8 cells formed significantly fewer colonies compared to parental OVCAR8. The experiment was performed in triplicate with three biological replicates. Statistical analysis was conducted with two-way ANOVA. ∗ p < 0.05 and ∗∗ p < 0.01. (G) Silencing of NOS2 by two different siRNAs significantly reduced the number of colonies formed by OVCAR8 cells. Clonogenic growth was measured after 10 days, quantified using ImageJ, and represented as a bar graph (mean ± SEM). The experiment was performed in triplicate with three biological replicates. Statistical analysis was conducted with two-way ANOVA. ∗ p < 0.05 and ∗∗ p < 0.01. All experiments were independently repeated two to three times.
Article Snippet: The following primers for TaqMan Gene Expression Assay were purchased from
Techniques: Knock-Out, Migration, Western Blot, Expressing, Knockdown, Comparison, Control, Transfection, Quantitative RT-PCR, Scratch Wound Assay Assay, Cell Analysis
Journal: Molecular Therapy. Nucleic Acids
Article Title: Nitric oxide-dependent stabilization of vimentin confers chemoresistance in ovarian cancer
doi: 10.1016/j.omtn.2026.102924
Figure Lengend Snippet: Knockdown of NOS2 impaired the expression of genes involved in epithelial-to-mesenchymal transition (A) Heatmap showing genes whose expression differed significantly between NOS2 KO-1 and parental OVCAR8 cells. Top 15 altered genes are presented; red indicates upregulated genes, while green indicates downregulated genes. (B) Volcano plot showing the genes that altered significantly between NOS2 knockdown OVCAR8 and parental cells based on RNA-seq analysis. (C) Bubble plot of KEGG enrichment terms based on RNA-seq results showing enrichment of pathways related to wound healing, extracellular matrix organization, and regulation of cell shape. All the experiments were performed in triplicates.
Article Snippet: The following primers for TaqMan Gene Expression Assay were purchased from
Techniques: Knockdown, Expressing, RNA Sequencing
Journal: Molecular Therapy. Nucleic Acids
Article Title: Nitric oxide-dependent stabilization of vimentin confers chemoresistance in ovarian cancer
doi: 10.1016/j.omtn.2026.102924
Figure Lengend Snippet: L-NMMA promotes vimentin destabilization by enhancing its ubiquitination (A) CHX chase assay showing vimentin protein levels in OVCAR8 cells treated with 10 mM L-NMMA at different time points. (B) Vimentin ubiquitination was assessed in OVCAR8 cells treated with L-NMMA for 24 h, in the presence of the proteasome inhibitor MG-132 (10 μM) for the final 4 h, followed by immunoprecipitation and western blot using an anti-ubiquitin antibody. (C) Measurement of vimentin S-nitrosylation levels was performed by immunoprecipitation in OVCAR8 cells. (D) Western blot analysis of vimentin expression in OVCAR8 cells treated with 10 mM L-NMMA alone or in combination with MG132 at 1, 5, or 10 μM. (E) Tumor growth and proliferation were monitored in mice bearing parental and NOS2 KO OVCAR8 tumors, evaluated by ROI measurements every 4 days ( n = 6). (F) Kaplan-Meier survival curves of mice bearing parental and NOS2 KO OVCAR8 tumors following cisplatin treatment ( n = 6). Data are presented as mean ± SEM. Statistical analysis was performed using two-way ANOVA for growth curves and the Kaplan-Meier method for survival analysis ( p < 0.05, ∗ p < 0.01). Experiments were performed in duplicate or triplicate.
Article Snippet: The following primers for TaqMan Gene Expression Assay were purchased from
Techniques: Ubiquitin Proteomics, Immunoprecipitation, Western Blot, Expressing
Journal: Bioactive Materials
Article Title: Geometry-driven immunomodulation in 3D-printed bioceramics: Negative curvature promotes macrophage M2 polarization via Ras-MAPK/HIF-1α signaling for vascularized osteogenesis
doi: 10.1016/j.bioactmat.2026.01.001
Figure Lengend Snippet: Macrophage polarization analysis of Raw264.7 on structures with different gaussian curvature: (A, B) Chord Diagram for qPCR analysis of CCR7, IL6, iNOS-inflammatory and M1 marker genes, and Arg-1, CD206, IL10-M2 related protein genes in different Gaussian curvature groups. (C) Protein content of Arg-1 in different Gaussian curvature groups at 1 and 3 days. (D) Integral plots of the five experimental groups. IL4 group is the positive control for CD206 expression and lipopolysaccharide (LPS) group is the negative control.
Article Snippet: The reagents used in the experiment included: H-DMEM(11965118, Gibco, USA.), α-DMEM medium(12571063, Gibco, USA.), TritonX-100(ST1723, Beyotime, China), 4 % paraformaldehyde (BL539A, Biosharp, China),FBS(A5256701, Gibco, USA.),ECM medium (Science Cell, USA.),and DAPI staining solution (C1006, Beyotime, China),BCIP/NBT(C3206, Beyotime, China), reactive oxygen species kit (S0033S, Beyotime, China), BSA (B2064, ≥98 %, Sigma-Aldrich, USA.),CD31 antibody (ab28364, Abcam, USA.), secondary anti-IGg (ab175773, Alexa Fluor® 680, Abcam, USA.), Phalloidin-iFluor 488(ab176753, Abcam, USA.), CCR7(AF5293, Bioss, China), CD206 (bsm-60761R, Bioss, China),
Techniques: Marker, Positive Control, Expressing, Negative Control
Journal: Bioactive Materials
Article Title: Immunomodulatory effects of biodegradable Mg–Cu–Zn alloy in esophageal cancer
doi: 10.1016/j.bioactmat.2026.02.046
Figure Lengend Snippet: Distribution of CD163 + M2 TAMs in AKR-derived allograft tumor tissues from immunocompetent C57BL/6 mice. (a, b) Representative IHC staining images showing CD163 + M2 TAMs in the (a) peritumoral stroma and (b) tumor islets. Lower panels display higher-magnification views of the regions outlined by red dashed boxes. (c, d) Quantification of CD163 + cells in the (c) peritumoral stroma and (d) tumor islets. (e) Comparison of CD163 + cell density between the peritumoral stroma and tumor islets. (f) Total number of CD163 + cells in allograft tumors (peritumoral stroma and tumor islets combined). (g, h) Comparison of the density between iNOS + cells and CD163 + cells in the (g) peritumoral stroma and (h) tumor islets. (i, j) Quantification of iNOS + /CD163 + ratio in the (i) peritumoral stroma and (j) tumor islets. p < 0.05 (∗), p < 0.01 (∗∗), p < 0.001 (∗∗∗). A field of view is ∼0.086 mm 2 in (c−j).
Article Snippet: Tissue sections were then incubated with primary
Techniques: Derivative Assay, Immunohistochemistry, Comparison
Journal: Bioactive Materials
Article Title: Immunomodulatory effects of biodegradable Mg–Cu–Zn alloy in esophageal cancer
doi: 10.1016/j.bioactmat.2026.02.046
Figure Lengend Snippet: Distribution of CD163 + M2 TAMs in AKR-derived allograft tumor tissues from immunocompetent C57BL/6 mice. (a, b) Representative IHC staining images showing CD163 + M2 TAMs in the (a) peritumoral stroma and (b) tumor islets. Lower panels display higher-magnification views of the regions outlined by red dashed boxes. (c, d) Quantification of CD163 + cells in the (c) peritumoral stroma and (d) tumor islets. (e) Comparison of CD163 + cell density between the peritumoral stroma and tumor islets. (f) Total number of CD163 + cells in allograft tumors (peritumoral stroma and tumor islets combined). (g, h) Comparison of the density between iNOS + cells and CD163 + cells in the (g) peritumoral stroma and (h) tumor islets. (i, j) Quantification of iNOS + /CD163 + ratio in the (i) peritumoral stroma and (j) tumor islets. p < 0.05 (∗), p < 0.01 (∗∗), p < 0.001 (∗∗∗). A field of view is ∼0.086 mm 2 in (c−j).
Article Snippet: Tissue sections were then incubated with primary antibodies against iNOS (22226-1-AP,
Techniques: Derivative Assay, Immunohistochemistry, Comparison
Journal: Bioactive Materials
Article Title: Skin-mimetic bilayer hydrogel normalizes diabetic wound healing by orchestrating inflammatory cell dynamics: An early intervention strategy
doi: 10.1016/j.bioactmat.2026.02.025
Figure Lengend Snippet: In vitro assay of inflammation cell modulation under stimulation of SP-loaded Gel/HA and IL-10-loaded Ker/Cu. a Schematic of neutrophil migration test using a transwell system after treatment with the leaching solution of SP@Gel/HA. Gel/HA and blank culture medium were set for comparison. b Wright-Giemsa staining of HL-60 cells before and after differentiation. c Photograph of dHL-60 cells migrating to the lower chamber. d Quantitative analysis of neutrophil migration after treatments with SP@Gel/HA and Gel/HA. Untreated group serves as a control. e Schematic of macrophage polarization after treatment with LPS, IL-10, or IL-10/LPS. f Representative fluorescence images of macrophages after different treatment. Red: iNOS (M1 marker); Green: CD163 (M2c marker); Blue: DAPI (nuclear staining). g Schematic of macrophage efferocytosis test toward apoptotic dHL-60 cells under different treatments. h Flow cytometry plots of dHL-60 cells before and after apoptosis induction. i Representative fluorescent images of macrophage efferocytosis toward apoptotic dHL-60 cells under different treatments. Macrophages and apoptotic cells were stained green and red, respectively. All data were generated from at least three independent experiments and presented as the means ± standard deviation. Statistical analysis was performed by one-way ANOVA. ns, not significant; ∗∗∗∗p < 0.0001.
Article Snippet: After another 48 h, macrophage cells were harvested and stained with
Techniques: In Vitro, Migration, Comparison, Staining, Control, Fluorescence, Marker, Flow Cytometry, Generated, Standard Deviation
Journal: Bioactive Materials
Article Title: Skin-mimetic bilayer hydrogel normalizes diabetic wound healing by orchestrating inflammatory cell dynamics: An early intervention strategy
doi: 10.1016/j.bioactmat.2026.02.025
Figure Lengend Snippet: Bilayer hydrogel orchestrates inflammatory cell dynamics during the early inflammation phase of diabetic wound healing. a Experimental timeline for assay of early neutrophil recruitment. b Immunohistochemical staining for Ly-6G in wounds at 8 h, 1 d and 3 d after injury. Diabetic wounds were treated with SP/IL-10@Bilayer, SP@Bilayer, IL-10@Bilayer, and saline solution (Model), respectively. Healthy mice treated with saline solution were set as Normal. c Quantitative analysis of Ly-6G + cells in each group. d Relative expression of CXCL-1 on day 1. e Relative expression of MCP-1 on day 1. f Experimental timeline for assay of M1 macrophage infiltration. g Immunofluorescence staining for iNOS in wounds on days 1, 3 and 6 after injury. h Quantitative analysis of iNOS + cells in each group. i-k Relative expressions of macrophage-associated pro-inflammatory cytokines including TNF-α, IL-1β and IL-6 on day 3. l Schematic illustrating the dynamic modulation of inflammatory cells during the early inflammation phase of diabetic wounds by SP/IL-10@Bilayer. All data were generated from at least three independent experiments and presented as the means ± standard deviation. Statistical analysis was performed by one-way ANOVA. # means significant difference compared to the normal group. #p < 0.05, ##p < 0.01 and ###p < 0.001; ∗ means significant difference compared to the model group. ∗p < 0.05; & means significant difference compared to SP/IL-10@Bilayer. & p < 0.05 and && p < 0.01.
Article Snippet: After another 48 h, macrophage cells were harvested and stained with
Techniques: Immunohistochemical staining, Staining, Saline, Expressing, Immunofluorescence, Generated, Standard Deviation
Journal: Bioactive Materials
Article Title: Skin-mimetic bilayer hydrogel normalizes diabetic wound healing by orchestrating inflammatory cell dynamics: An early intervention strategy
doi: 10.1016/j.bioactmat.2026.02.025
Figure Lengend Snippet: In vitro assay of inflammation cell modulation under stimulation of SP-loaded Gel/HA and IL-10-loaded Ker/Cu. a Schematic of neutrophil migration test using a transwell system after treatment with the leaching solution of SP@Gel/HA. Gel/HA and blank culture medium were set for comparison. b Wright-Giemsa staining of HL-60 cells before and after differentiation. c Photograph of dHL-60 cells migrating to the lower chamber. d Quantitative analysis of neutrophil migration after treatments with SP@Gel/HA and Gel/HA. Untreated group serves as a control. e Schematic of macrophage polarization after treatment with LPS, IL-10, or IL-10/LPS. f Representative fluorescence images of macrophages after different treatment. Red: iNOS (M1 marker); Green: CD163 (M2c marker); Blue: DAPI (nuclear staining). g Schematic of macrophage efferocytosis test toward apoptotic dHL-60 cells under different treatments. h Flow cytometry plots of dHL-60 cells before and after apoptosis induction. i Representative fluorescent images of macrophage efferocytosis toward apoptotic dHL-60 cells under different treatments. Macrophages and apoptotic cells were stained green and red, respectively. All data were generated from at least three independent experiments and presented as the means ± standard deviation. Statistical analysis was performed by one-way ANOVA. ns, not significant; ∗∗∗∗p < 0.0001.
Article Snippet: The infiltration of pro-inflammatory (M1) macrophages and polarization of M2c macrophages were analyzed by immunofluorescence staining using
Techniques: In Vitro, Migration, Comparison, Staining, Control, Fluorescence, Marker, Flow Cytometry, Generated, Standard Deviation
Journal: Bioactive Materials
Article Title: Skin-mimetic bilayer hydrogel normalizes diabetic wound healing by orchestrating inflammatory cell dynamics: An early intervention strategy
doi: 10.1016/j.bioactmat.2026.02.025
Figure Lengend Snippet: Bilayer hydrogel orchestrates inflammatory cell dynamics during the early inflammation phase of diabetic wound healing. a Experimental timeline for assay of early neutrophil recruitment. b Immunohistochemical staining for Ly-6G in wounds at 8 h, 1 d and 3 d after injury. Diabetic wounds were treated with SP/IL-10@Bilayer, SP@Bilayer, IL-10@Bilayer, and saline solution (Model), respectively. Healthy mice treated with saline solution were set as Normal. c Quantitative analysis of Ly-6G + cells in each group. d Relative expression of CXCL-1 on day 1. e Relative expression of MCP-1 on day 1. f Experimental timeline for assay of M1 macrophage infiltration. g Immunofluorescence staining for iNOS in wounds on days 1, 3 and 6 after injury. h Quantitative analysis of iNOS + cells in each group. i-k Relative expressions of macrophage-associated pro-inflammatory cytokines including TNF-α, IL-1β and IL-6 on day 3. l Schematic illustrating the dynamic modulation of inflammatory cells during the early inflammation phase of diabetic wounds by SP/IL-10@Bilayer. All data were generated from at least three independent experiments and presented as the means ± standard deviation. Statistical analysis was performed by one-way ANOVA. # means significant difference compared to the normal group. #p < 0.05, ##p < 0.01 and ###p < 0.001; ∗ means significant difference compared to the model group. ∗p < 0.05; & means significant difference compared to SP/IL-10@Bilayer. & p < 0.05 and && p < 0.01.
Article Snippet: The infiltration of pro-inflammatory (M1) macrophages and polarization of M2c macrophages were analyzed by immunofluorescence staining using
Techniques: Immunohistochemical staining, Staining, Saline, Expressing, Immunofluorescence, Generated, Standard Deviation
0.4 AND NO-specific effect >0.5); NO-dependent downregulation (blue; WT stimulation effect < −0.4 AND NO-specific effect < −0.5); NO-independent response (yellow; |WT stimulation effect| > 0.4 AND |iNOS KO stimulation effect| > 0.4 AND |NO-specific effect| < 0.5); under thresholds (grey; not meeting criteria above). " width="100%" height="100%">
Journal: Redox Biology
Article Title: Multi-omic analysis reveals nitric oxide dependent remodeling in classically activated macrophages and identifies negative regulation mediated by AKR1A1
doi: 10.1016/j.redox.2026.104181
Figure Lengend Snippet: Global proteomic profiling reveals NO•-dependent remodeling in classically activated macrophages (A) Nitrite concentrations in media of wild-type (WT) or iNOS knockout (KO) BMDM with or without LPS/IFNγ stimulation for 48 h, and with or without 200 μM DETA-NONOate treatment. Data represents mean ± standard deviation, n = 3 biological replicates. Statistical analysis by one-way ANOVA with Tukey's post hoc test for multiple comparisons with p-value reported; ns indicates not significant. (B) Principal component analysis (PCA) of all proteins. PC1 and PC2 shown with 95% confidence ellipses. (C – D) Pathway enrichment analysis (Mouse WikiPathway 2024 via Enrichr) for PC2-negative (C) and PC2-positive (D) contributors. (E) Heatmap showing Z-score normalized expression of all proteins across condition (individual replicates designated by "_1″ through "_4″ suffix). Hierarchical clustering based on Pearson correlation distance (Ward.D2 linkage). Color scale: blue (low) and red (high) expression relative to mean. Rows categorized by response pattern: NO-dependent upregulation (red; WT stimulation effect >0.4 AND NO-specific effect >0.5); NO-dependent downregulation (blue; WT stimulation effect < −0.4 AND NO-specific effect < −0.5); NO-independent response (yellow; |WT stimulation effect| > 0.4 AND |iNOS KO stimulation effect| > 0.4 AND |NO-specific effect| < 0.5); under thresholds (grey; not meeting criteria above).
Article Snippet: Primary bone marrow-derived macrophages (BMDMs) were isolated from 8 to 12-week-old male and female wild-type C57BL/6J mice or
Techniques: Knock-Out, Standard Deviation, Expressing
Journal: Redox Biology
Article Title: Multi-omic analysis reveals nitric oxide dependent remodeling in classically activated macrophages and identifies negative regulation mediated by AKR1A1
doi: 10.1016/j.redox.2026.104181
Figure Lengend Snippet: The effect of NO• in transcriptomic remodeling and its role in mediating major proteomic changes. (A) Left : Cross-omic correlation analysis comparing iNOS-dependent proteomic and transcriptomic changes (log 2 fold change: stimulated iNOS KO versus stimulated WT) in RAW264.7 cells for genes with corresponding protein measurements (n = 5001). Points colored by concordance category based on statistical significance: protein only (blue), RNA only (orange), both significant with opposite direction (yellow), both significant with concordant effect (green), or neither (grey). Linear regression with 95% confidence interval (shaded region). Doughnut chart shows category distribution (%) with counts in each category. Right : Pathway enrichment analysis (Mouse WikiPathway 2024 via Enrichr) for each of the category. (B–C) Cross-omic correlation for PCA-defined NO-regulated protein subsets. (B) PC2-negative contributors. Points colored by pathway membership based on enrichment analysis: ETC/OXPHOS (red), Cell Cycle/IL-17A signaling (blue), or other pathways (grey). All pathway-annotated genes are labeled. (C) PC2-positive contributors. Points colored by pathway membership: Oxidative Stress/Glutathione metabolism (orange) or other pathways (grey). All pathway-annotated genes are labeled. Linear regression with 95% confidence interval shown (shaded region) for B–C. (D – E) Transcription factor pathway enrichment analysis (D: ChEA 2022; E: ENCODE and ChEA Consensus) using Enrichr among PC2-positive contributors from C.
Article Snippet: Primary bone marrow-derived macrophages (BMDMs) were isolated from 8 to 12-week-old male and female wild-type C57BL/6J mice or
Techniques: Labeling
Journal: Redox Biology
Article Title: Multi-omic analysis reveals nitric oxide dependent remodeling in classically activated macrophages and identifies negative regulation mediated by AKR1A1
doi: 10.1016/j.redox.2026.104181
Figure Lengend Snippet: NO• drives complex-specific remodeling of the electron transport chain (A) Cross-model proteomic correlation for ETC/OXPHOS proteins comparing iNOS-dependent changes (log 2 fold change: stimulated iNOS knockout (KO) versus stimulated wildtype (WT)) between BMDM (x-axis) and RAW264.7 cells (y-axis). Dots represent 68 proteins defined by KEGG OXPHOS pathway that are quantified in both models, color coded by ETC Complex assignment; V-ATPase subunits (vacuolar/lysosomal) shown separately from mitochondrial Complex V (F-type ATP synthase). Linear regression with 95% confidence interval (shaded region). (B) Cross-omic correlation for ETC/OXPHOS proteins comparing iNOS-dependent transcriptomic (x-axis) and proteomic (y-axis) changes in RAW264.7 cells (n = 69 genes with measurements in both datasets). Points colored by ETC complex as in (A). Linear regression with 95% confidence interval shown. (C – G) Heatmaps showing changes in each of the ETC complexes: (C) Complex I, (D) Complex II, (E) Complex III, (F) Complex IV, (G) Complex V, across eight experimental conditions: unstimulated (unstim) or stimulated (stim) with LPS/IFNγ for 48 h (stim) in WT or iNOS KO genotypes; ± DETA-NONOate (DETA). Colors represent row-wise Z-score normalized protein abundance (blue = decreased, red = increased relative to row mean). Rows (proteins) clustered by Pearson correlation; columns ordered by experimental condition. n = 4 biological replicates per condition (individual replicates designated by “_1” through “_4” suffix). (H) . Normalized oxygen consumption rate (OCR) of BMDM across experimental conditions as described in C-G. Data represent mean ± standard deviation, n = 3 biological replicates. Statistical analysis by one-way ANOVA with Tukey's post hoc test for multiple comparisons with p-value reported; ns indicates not significant.
Article Snippet: Primary bone marrow-derived macrophages (BMDMs) were isolated from 8 to 12-week-old male and female wild-type C57BL/6J mice or
Techniques: Knock-Out, Quantitative Proteomics, Standard Deviation
Journal: Redox Biology
Article Title: Multi-omic analysis reveals nitric oxide dependent remodeling in classically activated macrophages and identifies negative regulation mediated by AKR1A1
doi: 10.1016/j.redox.2026.104181
Figure Lengend Snippet: Akr1a1 induction requires both classical activation and NO• signaling and is partially NRF2-dependent (A) Proteins significantly decreased in iNOS KO vs WT (both LPS/IFNγ-stimulated) across all three datasets (BMDM proteomics, RAW264.7 proteomics, RAW264.7 RNA-seq), ranked by RAW264.7 protein fold change. Red highlights proteins significantly induced by LPS/IFNγ in WT cells (p-adj <0.05, log2FC > 0). Top 15 labeled. (B) Top : Representative immunoblot showing AKR1A1 and iNOS protein abundance in WT and iNOS KO BMDMs stimulated with LPS/IFNγ for 0, 6, 12, 24, or 48 h. Bottom : Quantification of AKR1A1 and iNOS protein abundance (normalized to α-tubulin). Data represents mean ± standard deviation (SD) from n = 3 independent experiments. (C) Relative abundance of AKR1A1 protein from RAW264.7 cell proteomics dataset. (D) Left: Immunoblot showing AKR1A1 and iNOS protein abundance in primary WT or iNOS KO peritoneal macrophages with or without 48-h LPS/IFNγ stimulation (in triplicate). Right: Quantification of AKR1A1 protein abundance (normalized to α-tubulin). Data represents mean ± SD, n = 3 biological replicates. (E) Left: Representative immunoblot showing AKR1A1 and iNOS protein abundance in WT and iNOS KO BMDMs under four conditions: treated or untreated for 48 h with LPS/IFNγ alone, 200 μM DETA-NONOate alone, or LPS/IFNγ and DETA-NONOate combined. Right: Quantification of AKR1A1 protein abundance (normalized to α-tubulin). Data represents mean ± SD, n = 3 independent experiments. (F) Relative mRNA expression of Akr1a1 measured by RT-PCR from cells treated as in E. Expression normalized to Hnrpab reference gene using ΔΔCt method. Data represents mean ± SD, n = 3 biological replicates. (G – I) Relative abundance of MafG (G), MafK (H), and MafF (I) from BMDM proteomics dataset. (J) Relative mRNA expression of Akr1a1 in iNOS KO BMDMs unstimulated or stimulated with LPS/IFNγ ± DETA-NONOate ± ML385 (Nrf2 inhibitor, 10 μM) for 48 h. Expression normalized to Hnrpab . Data represents mean ± SD, n = 3 biological replicates. Statistics : For panels B-J, statistical comparisons were performed using one-way ANOVA with Tukey's post hoc test for multiple comparisons with p-value reported; ns indicates not significant.
Article Snippet: Primary bone marrow-derived macrophages (BMDMs) were isolated from 8 to 12-week-old male and female wild-type C57BL/6J mice or
Techniques: Activation Assay, RNA Sequencing, Labeling, Western Blot, Quantitative Proteomics, Standard Deviation, Expressing, Reverse Transcription Polymerase Chain Reaction
Journal: Redox Biology
Article Title: Multi-omic analysis reveals nitric oxide dependent remodeling in classically activated macrophages and identifies negative regulation mediated by AKR1A1
doi: 10.1016/j.redox.2026.104181
Figure Lengend Snippet: Akr1a1 regulates metabolic and functional response to classical activation by counteracting NO• (A ) Schematic showing AKR1A1's main enzyme activity as SNO-CoA reductase (yellow) and its mechanistic connection to NO• driven inhibition of pyruvate dehydrogenase complex (PDHC) (blue). SNO-CoA is the key molecule delivering NO-derived modifications onto the lipoic cofactor at the catalytic center of PDHC's E2 subunits (B) Left: Representative immunoblot showing iNOS, DLAT (E2 subunit of PDHC), AKR1A1 protein abundance, along with functional lipoic acid detection (anti-lipoic acid antibody) at the molecular weight of DLAT in immortalized bone marrow-derived macrophages (iBMDMs). Wildtype (WT) or Akr1a1 KO (KO) iBMDMs were stimulated with LPS/IFNγ for 0, 24, or 48 h. Each lane represents an independent iBMDM clone (generated using independent guide RNAs for Akr1a1 KO). Right: Quantification of functional lipoic acid to DLAT protein ratio at 24-h timepoint, normalized to unstimulated WT condition. Data represents mean ± standard deviation (SD), n = 2 independent clones per genotype. (C) Relative PDHC enzymatic activity measured in cell lysates from iBMDMs treated as in (B) at 0-, 24-, and 48-h timepoints. Activity normalized to unstimulated WT. Data represents mean ± SD, n = 4 measurements per genotype per timepoint (2 independent iBMDM clones assayed in 2 separate experiments) . (D) Experimental design schematic for in vitro PDHC–Akr1a1 co-incubation activity assays. Purified porcine PDHC was incubated for 3 h at room temperature with indicated combinations of PDHC substrates (NADH and CoA) and PAPA-NONOate (NO• donor) ± purified Akr1a1-FLAG (WT or K127A) ± NADPH (Akr1a1 cofactor), followed by measurement of PDHC activity. (E) Relative PDHC enzymatic activity from in vitro co-incubation assays as described in (D). All components added simultaneously and incubated for 3 h at room temperature before saturating levels of substrate and activity measurement. Activity normalized to protein only control. Data represents mean ± SD, n = 3 independent reactions. (F) Schematic showing SNO-CoA mediated inhibition of PDHC upstream of IRG1 regulating itaconate level, and AKR1A1 counteracting the effect of NO in this process. (G) Percent 2-labeled acetyl-CoA from kinetic U– 13 C- d -glucose tracing in WT, Akr1a1 KO, or Akr1a1/iNOS DKO RAW264.7 cells unstimulated or stimulated with LPS/IFNγ for 48 h. Data represents mean ± SD, n = 3 biological replicates. (H) Relative total abundance of itaconate from conditions described in (G). (I) Pathway enrichment analysis (GO Biological Process) using Enrichr among downregulated differential expressed genes from . (J) Relative mRNA expression of IL6 from of WT, Akr1a1 KO, iNOS KO and Akr1a1/iNOS DKO RAW264.7 cells stimulated for 0-, 3-, 6-, 12, 24-, and 48-h. Expression normalized to Hnrpab . n = 1 per timepoint. (K) IL-6 measured via ELISA from media of WT, Akr1a1 KO, and Akr1a1/iNOS DKO RAW264.7 cells unstimulated or stimulated for 48-h. Data represents mean ± SD, n = 3 biological replicates. (L) Median fluorescent intensity (MFI) for the markers, F4/80, CD86, MHCII, and CD206, on WT or Akr1a1 KO RAW264.7 cells with or without 48-h LPS/IFNγ. Data represents mean ± SD, n = 3 biological replicates. Statistics : For panel E-H and K, statistical comparisons were performed using one-way ANOVA with Tukey's post hoc test for multiple comparisons with p-value reported; ns indicates not significant. For panel B, C, and L, statistical comparisons were performed using unpaired two-tailed t -test with p-value reported.
Article Snippet: Primary bone marrow-derived macrophages (BMDMs) were isolated from 8 to 12-week-old male and female wild-type C57BL/6J mice or
Techniques: Functional Assay, Activation Assay, Activity Assay, Inhibition, Derivative Assay, Western Blot, Quantitative Proteomics, Molecular Weight, Generated, Standard Deviation, Clone Assay, In Vitro, Incubation, Purification, Control, Labeling, Expressing, Enzyme-linked Immunosorbent Assay, Two Tailed Test
Journal: Materials Today Bio
Article Title: Exosomal lncRNA OTUD6B-AS1 as a pathogenic nanocarrier promotes inflammatory macrophage polarization in endometritis via a targetable ceRNA circuit
doi: 10.1016/j.mtbio.2026.103027
Figure Lengend Snippet: Analysis of macrophage activation in the uterine tissue of cows with endometritis. (A, B) Representative immunofluorescence (IF) staining images (A) and quantitative analysis (B) of iNOS (M1 marker, red) in endometrial tissues from healthy cows and cows with endometritis. Nuclei were counterstained with DAPI (blue). (C, D) Representative IF staining images (C) and quantitative analysis (D) of Arg1 (M2 marker, red) in endometrial tissues. (E, F) Relative mRNA expression levels of iNOS (E) and Arg1 (F) in endometrial tissues, as determined by qPCR. (G, H) Relative expression levels of IL-1β, IL-6 and TNF-α in endometrial tissues, as determined by IHC. (I, J) Relative mRNA expression levels of IL-1β (I) and IL-6 (J) in endometrial tissues, as determined by qPCR. ∗p < 0.05, ∗∗p < 0.01, ∗∗∗p < 0.001, ∗∗∗∗p < 0.0001. (For interpretation of the references to colour in this figure legend, the reader is referred to the Web version of this article.)
Article Snippet: The antibodies used include
Techniques: Activation Assay, Immunofluorescence, Staining, Marker, Expressing
Journal: Materials Today Bio
Article Title: Exosomal lncRNA OTUD6B-AS1 as a pathogenic nanocarrier promotes inflammatory macrophage polarization in endometritis via a targetable ceRNA circuit
doi: 10.1016/j.mtbio.2026.103027
Figure Lengend Snippet: Exosomes from LPS-stimulated EECs induce pro-inflammatory macrophage activation. (A) Schematic diagram of the experimental setup for exosome uptake. (B) Fluorescence microscopy images showing the uptake of PKH67-labeled exosomes (green) by macrophages. Cytoskeleton was stained with Phalloidin (red), and nuclei were stained with DAPI (blue). (C) Western blotting analysis of phosphorylated NF-κB p65 (p-p65) in macrophages treated with Control-exo or LPS-exo. (D, E) Representative immunofluorescence (IF) staining images (D) and quantitative analysis (E) of iNOS (greed) in macrophages. (F, G) Representative IF staining images (F) and quantitative analysis (G) of Arg1 (red) in macrophages. (H) Schematic diagram of co-culture experiments. (I, J) Relative mRNA expression levels of iNOS (I) and Arg1 (J) in macrophages after co-culture with EECs. ∗p < 0.05, ∗∗p < 0.01, ∗∗∗p < 0.001, ∗∗∗∗p < 0.0001. (For interpretation of the references to colour in this figure legend, the reader is referred to the Web version of this article.)
Article Snippet: The antibodies used include
Techniques: Activation Assay, Fluorescence, Microscopy, Labeling, Staining, Western Blot, Control, Immunofluorescence, Co-Culture Assay, Expressing
Journal: Materials Today Bio
Article Title: Exosomal lncRNA OTUD6B-AS1 as a pathogenic nanocarrier promotes inflammatory macrophage polarization in endometritis via a targetable ceRNA circuit
doi: 10.1016/j.mtbio.2026.103027
Figure Lengend Snippet: Transcriptomic profiling reveals significant enrichment of lncRNA OTUD6B-AS1 in exosomes derived from LPS-stimulated EECs. (A, B) LPS-exo was treated with RNase A alone or in combination with Triton X-100 for 4 h, and then co-incubated with macrophages. Relative expression levels of iNOS (A) and Arg1 (B) in macrophages. (C) Schematic overview of the RNA sequencing and analysis workflow. (D) Volcano plot showing differentially expressed lncRNAs in LPS-exo compared to Control-exo. (E, F) Gene Ontology (GO) biological process enrichment analysis (E) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis (F) of the differentially expressed lncRNAs. (G) qPCR validation of the 6 upregulated lncRNAs in Control-exo and LPS-exo. (H) LPS-exo was treated with RNase A alone or in combination with Triton X-100 for 4 h, and then co-incubated with macrophages. Relative mRNA expression level of lncRNA OTUD6B-AS1 in macrophages. (I) A proposed competing endogenous RNA (ceRNA) network involving lncRNA OTUD6B-AS1, miR-128, and Notch2. (J) Relative mRNA expression level of lncRNA OTUD6B-AS1 in control and LPS-stimulated EECs. (K, L) RNA fluorescence in situ hybridization (RNA-FISH) showing the subcellular localization of lncRNA OTUD6B-AS1 (red) in EECs (K) and its quantitative cytoplasmic/nuclear distribution (L). Nuclei were stained with DAPI (blue). (M – P) Relative mRNA expression levels of lncRNA OTUD6B-AS1 (M − O) and miR-128 (P) in endometrial tissues from healthy cows and cows with endometritis, as determined by qPCR (O, P) and RNA-FISH (M) with quantification (N). (Q) Western blotting analysis of Notch2, RBP-Jκ, and p-p65 protein levels in endometrial tissues. ∗p < 0.05, ∗∗p < 0.01, ∗∗∗p < 0.001, ∗∗∗∗p < 0.0001. (For interpretation of the references to colour in this figure legend, the reader is referred to the Web version of this article.)
Article Snippet: The antibodies used include
Techniques: Derivative Assay, Incubation, Expressing, RNA Sequencing, Control, Biomarker Discovery, Fluorescence, In Situ Hybridization, Staining, Western Blot
Journal: Materials Today Bio
Article Title: Exosomal lncRNA OTUD6B-AS1 as a pathogenic nanocarrier promotes inflammatory macrophage polarization in endometritis via a targetable ceRNA circuit
doi: 10.1016/j.mtbio.2026.103027
Figure Lengend Snippet: EECs-derived exosomes induce pro-inflammatory macrophage activation via delivery of lncRNA OTUD6B-AS1. (A) Relative mRNA expression level of lncRNA OTUD6B-AS1 in macrophages treated with Control-exo or LPS-exo. (B, C) RNA-FISH images (B) and quantitative analysis (C) showing lncRNA OTUD6B-AS1 (red) transfer to macrophages after co-culture with Control-exo or LPS-exo. Nuclei were stained with DAPI (blue). (D) Relative mRNA expression level of lncRNA OTUD6B-AS1 in macrophages after transfection with lncRNA OTUD6B-AS1 overexpression plasmids (OE-lncRNA) or control plasmids (OE-NC). ( E – I) Western blotting analysis of Notch2, RBP-Jκ, and p-p65 (E), along with immunofluorescence (IF) quantitative analysis of iNOS (F, G) and Arg1 (H, I) protein levels in macrophages after transfection with OE-lncRNA or OE-NC. (J – N) Western blotting analysis of Notch2, RBP-Jκ, and p-p65 (J), along with IF quantitative analysis of iNOS (K, L) and Arg1 (M, N) protein levels in macrophages after lncRNA OTUD6B-AS1 knockdown (si-lncRNA) or control treatment (si-NC). (O) Relative mRNA expression level of lncRNA OTUD6B-AS1 in exosomes isolated from lncRNA OTUD6B-AS1-knockdown LPS-stimulated EECs (si-lncRNA-LPS-exo) or exosomes from siRNA NC-transfected LPS-stimulated EECs (si-NC-LPS-exo). (P – S) IF quantitative analysis of iNOS (P, Q) and Arg1 (R, S) protein levels in macrophages treated with si-lncRNA-LPS-exo or si-NC-LPS-exo. (T) Relative mRNA expression levels of iNOS and Arg1 in macrophages treated with exosomes isolated from control EECs overexpressing lncRNA OTUD6B-AS1 (OE-lncRNA-Control-exo) or exosomes from control plasmids-transfected EECs (OE-NC-Control-exo). ∗p < 0.05, ∗∗p < 0.01, ∗∗∗p < 0.001, ∗∗∗∗p < 0.0001. (For interpretation of the references to colour in this figure legend, the reader is referred to the Web version of this article.)
Article Snippet: The antibodies used include
Techniques: Derivative Assay, Activation Assay, Expressing, Control, Co-Culture Assay, Staining, Transfection, Over Expression, Western Blot, Immunofluorescence, Knockdown, Isolation
Journal: Materials Today Bio
Article Title: Exosomal lncRNA OTUD6B-AS1 as a pathogenic nanocarrier promotes inflammatory macrophage polarization in endometritis via a targetable ceRNA circuit
doi: 10.1016/j.mtbio.2026.103027
Figure Lengend Snippet: lncRNA OTUD6B-AS1 acts as a ceRNA by sponging miR-128 to facilitate pro-inflammatory macrophage activation. (A) Relative mRNA expression level of miR-128 in macrophages treated with Control-exo or LPS-exo. (B) Luciferase reporter assay in HEK293T cells co-transfected with wild-type (WT) or mutant (MUT) lncRNA OTUD6B-AS1 reporter plasmids and miR-128 mimic or mimic NC. (C) RNA pull-down detection of the enrichment of miR-128 to lncRNA OTUD6B-AS1. (D) Ago2 RIP assay analysis of the enrichment of lncRNA OTUD6B-AS1 pulled-down from the Ago2 protein. (E) Relative mRNA expression level of miR-128 in macrophages transfected with OE-NC or OE-lncRNA. (F – J) Western blotting analysis of Notch2, RBP-Jκ, and p-p65 (F), along with immunofluorescence (IF) quantitative analysis of iNOS (G, H) and Arg1 (I, J) protein levels in macrophages co-transfected with OE-lncRNA and miR-128 mimic or mimic NC. (K, L) Relative mRNA expression levels of IL-1β (K) and IL-6 (L) in macrophages co-transfected with OE-lncRNA and miR-128 mimic or mimic NC. ∗p < 0.05, ∗∗p < 0.01, ∗∗∗p < 0.001, ∗∗∗∗p < 0.0001.
Article Snippet: The antibodies used include
Techniques: Activation Assay, Expressing, Control, Luciferase, Reporter Assay, Transfection, Mutagenesis, Western Blot, Immunofluorescence
Journal: Materials Today Bio
Article Title: Exosomal lncRNA OTUD6B-AS1 as a pathogenic nanocarrier promotes inflammatory macrophage polarization in endometritis via a targetable ceRNA circuit
doi: 10.1016/j.mtbio.2026.103027
Figure Lengend Snippet: Notch2 mediates the regulatory effect of the lncRNA OTUD6B-AS1/miR-128 axis on macrophage activation. (A) Predictive analysis of miR-128 targets using multiple databases. (B) Western blotting analysis of Notch2 protein levels in macrophages treated with Control-exo or LPS-exo. (C) Western blotting analysis of Notch2 protein levels in macrophages transfected with OE-NC or OE-lncRNA. (D – H) Western blotting analysis of Notch2, RBP-Jκ, and p-p65 (D), along with immunofluorescence (IF) quantitative analysis of iNOS (E, F) and Arg1 (G, H) protein levels in macrophages treated with OE-NC or OE-lncRNA and the Notch2 inhibitor DAPT. (I) Luciferase reporter assay in HEK293T cells co-transfected with WT or MUT Notch2 3′UTR reporter plasmids and miR-128 mimic or mimic NC. (J, K) Relative protein (J) and mRNA (K) expression levels of Notch2 in macrophages transfected with miR-128 mimic or mimic NC. (L – P) Western blotting analysis of Notch2, RBP-Jκ, and p-p65 (L), along with IF quantitative analysis of iNOS (M, N) and Arg1 (O, P) protein levels in macrophages co-treated with miR-128 inhibitor or inhibitor NC and DAPT. ∗p < 0.05, ∗∗p < 0.01, ∗∗∗p < 0.001, ∗∗∗∗p < 0.0001.
Article Snippet: The antibodies used include
Techniques: Activation Assay, Western Blot, Control, Transfection, Immunofluorescence, Luciferase, Reporter Assay, Expressing